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vtkMNITagPointReader.h
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1 /*=========================================================================
2 
3  Program: Visualization Toolkit
4  Module: vtkMNITagPointReader.h
5 
6  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
7  All rights reserved.
8  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
9 
10  This software is distributed WITHOUT ANY WARRANTY; without even
11  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
12  PURPOSE. See the above copyright notice for more information.
13 
14 =========================================================================*/
15 /*=========================================================================
16 
17 Copyright (c) 2006 Atamai, Inc.
18 
19 Use, modification and redistribution of the software, in source or
20 binary forms, are permitted provided that the following terms and
21 conditions are met:
22 
23 1) Redistribution of the source code, in verbatim or modified
24  form, must retain the above copyright notice, this license,
25  the following disclaimer, and any notices that refer to this
26  license and/or the following disclaimer.
27 
28 2) Redistribution in binary form must include the above copyright
29  notice, a copy of this license and the following disclaimer
30  in the documentation or with other materials provided with the
31  distribution.
32 
33 3) Modified copies of the source code must be clearly marked as such,
34  and must not be misrepresented as verbatim copies of the source code.
35 
36 THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE SOFTWARE "AS IS"
37 WITHOUT EXPRESSED OR IMPLIED WARRANTY INCLUDING, BUT NOT LIMITED TO,
38 THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
39 PURPOSE. IN NO EVENT SHALL ANY COPYRIGHT HOLDER OR OTHER PARTY WHO MAY
40 MODIFY AND/OR REDISTRIBUTE THE SOFTWARE UNDER THE TERMS OF THIS LICENSE
41 BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL OR CONSEQUENTIAL DAMAGES
42 (INCLUDING, BUT NOT LIMITED TO, LOSS OF DATA OR DATA BECOMING INACCURATE
43 OR LOSS OF PROFIT OR BUSINESS INTERRUPTION) ARISING IN ANY WAY OUT OF
44 THE USE OR INABILITY TO USE THE SOFTWARE, EVEN IF ADVISED OF THE
45 POSSIBILITY OF SUCH DAMAGES.
46 
47 =========================================================================*/
68 #ifndef vtkMNITagPointReader_h
69 #define vtkMNITagPointReader_h
70 
71 #include "vtkIOMINCModule.h" // For export macro
72 #include "vtkPolyDataAlgorithm.h"
73 #include "vtkStdString.h" // needed for std::string
74 
75 class vtkPolyData;
76 class vtkPoints;
77 class vtkStringArray;
78 class vtkDoubleArray;
79 class vtkIntArray;
80 
81 class VTKIOMINC_EXPORT vtkMNITagPointReader : public vtkPolyDataAlgorithm
82 {
83 public:
85 
86  static vtkMNITagPointReader *New();
87  void PrintSelf(ostream& os, vtkIndent indent) override;
88 
90 
93  vtkSetStringMacro(FileName);
94  vtkGetStringMacro(FileName);
96 
100  virtual const char* GetFileExtensions() {
101  return ".tag"; }
102 
106  virtual const char* GetDescriptiveName() {
107  return "MNI tags"; }
108 
112  virtual int CanReadFile(const char* name);
113 
120  virtual int GetNumberOfVolumes();
121 
127  virtual vtkPoints *GetPoints(int port);
128  virtual vtkPoints *GetPoints() { return this->GetPoints(0); }
129 
135  virtual vtkStringArray *GetLabelText();
136 
142  virtual vtkDoubleArray *GetWeights();
143 
149  virtual vtkIntArray *GetStructureIds();
150 
156  virtual vtkIntArray *GetPatientIds();
157 
161  virtual const char *GetComments();
162 
163 protected:
165  ~vtkMNITagPointReader() override;
166 
167  char *FileName;
169 
171  char *Comments;
172 
173  int ReadLine(istream &infile, std::string &linetext,
174  std::string::iterator &pos);
175  int ReadLineAfterComments(istream &infile, std::string &linetext,
176  std::string::iterator &pos);
177  int SkipWhitespace(istream &infile, std::string &linetext,
178  std::string::iterator &pos, int nl);
179  int ParseLeftHandSide(istream &infile, std::string &linetext,
180  std::string::iterator &pos,
181  std::string &identifier);
182  int ParseStringValue(istream &infile, std::string &linetext,
183  std::string::iterator &pos,
184  std::string &data);
185  int ParseIntValues(istream &infile, std::string &linetext,
186  std::string::iterator &pos,
187  int *values, int count);
188  int ParseFloatValues(istream &infile, std::string &linetext,
189  std::string::iterator &pos,
190  double *values, int count);
191 
192  virtual int ReadFile(vtkPolyData *output1, vtkPolyData *output2);
193 
194  int RequestData(vtkInformation* request,
195  vtkInformationVector** inInfo,
196  vtkInformationVector* outInfo) override;
197 
198 private:
200  void operator=(const vtkMNITagPointReader&) = delete;
201 
202 };
203 
204 #endif
vtkPoints
represent and manipulate 3D points
Definition: vtkPoints.h:39
vtkStdString.h
vtkMNITagPointReader::GetFileExtensions
virtual const char * GetFileExtensions()
Get the entension for this file format.
Definition: vtkMNITagPointReader.h:100
vtkMNITagPointReader::LineNumber
int LineNumber
Definition: vtkMNITagPointReader.h:170
vtkX3D::data
Definition: vtkX3D.h:315
vtkInformationVector
Store zero or more vtkInformation instances.
Definition: vtkInformationVector.h:41
vtkPolyDataAlgorithm::PrintSelf
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
vtkPolyDataAlgorithm.h
vtkX3D::port
Definition: vtkX3D.h:447
vtkPolyDataAlgorithm::RequestData
virtual int RequestData(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
This is called by the superclass.
vtkIndent
a simple class to control print indentation
Definition: vtkIndent.h:39
vtkIntArray
dynamic, self-adjusting array of int
Definition: vtkIntArray.h:45
vtkMNITagPointReader::GetDescriptiveName
virtual const char * GetDescriptiveName()
Get the name of this file format.
Definition: vtkMNITagPointReader.h:106
vtkMNITagPointReader::GetPoints
virtual vtkPoints * GetPoints()
Definition: vtkMNITagPointReader.h:128
vtkX3D::name
Definition: vtkX3D.h:219
vtkInformation
Store vtkAlgorithm input/output information.
Definition: vtkInformation.h:86
vtkX3D::string
Definition: vtkX3D.h:490
vtkMNITagPointReader
A reader for MNI tag files.
Definition: vtkMNITagPointReader.h:81
vtkMNITagPointReader::FileName
char * FileName
Definition: vtkMNITagPointReader.h:167
vtkPolyData
concrete dataset represents vertices, lines, polygons, and triangle strips
Definition: vtkPolyData.h:85
vtkStringArray
a vtkAbstractArray subclass for strings
Definition: vtkStringArray.h:42
vtkDoubleArray
dynamic, self-adjusting array of double
Definition: vtkDoubleArray.h:41
vtkMNITagPointReader::NumberOfVolumes
int NumberOfVolumes
Definition: vtkMNITagPointReader.h:168
vtkMNITagPointReader::Comments
char * Comments
Definition: vtkMNITagPointReader.h:171
vtkPolyDataAlgorithm::New
static vtkPolyDataAlgorithm * New()
vtkPolyDataAlgorithm
Superclass for algorithms that produce only polydata as output.
Definition: vtkPolyDataAlgorithm.h:44